Gene expression profiling / Coexpression analysis



To analyse a list of genes click here

Copy and paste a list of genes or probe sets (one by row, max : 10000 genes).

You are out of limit! Please, reduce the number of genes to 10000.

To analyse only one gene  click here



Help

Please enter a Gene Name (ex: TP53) or an Affymetrix Probe Sets ID (ex: 201746_at) or a Key Word (ex : phosphatase)

You are out of limit! Please, reduce the number of genes to 10000.
 Microarray Data Analysis Wizard
  •  Data sets
  •  Selected data table
  •  Analysis Tools
  •  Review selection
 
Data browsers
You have to select a data set to continue. Please, click on the icone below to get access to the data...
 
Current dataset description
Please, click on the button below to analyze the gene set in the selected data table.
 Analyze the data
 View expression profile
 Select Another data
 Back to main page
 
 Tools for data analysis
 Please, select a tool to analyze the data...

 
Selected data
Please, click on the "Confirm" button to validate your choice and to get access to the analysis resutls.
  Gene set:
  Table:
  Tools:
 Confirm your choice

 Add file
You have to be connected to get access to your G-Space. Please click here to log-in or sign up if you are'nt already a member.

Your G-space gives you the ability to save online your favorites gene lists and datasets for subsequent analysis.
  Current dataset: human_plasma_cell_differentiation_mas5 (see the description below)
  Current gene set:
Please, click on subimt button (left pannel) or change the selected dataset (right pannel, tool bar).
  •  Expression Profile
  •  Coexpression analysis
  •  Annotation
 Sort plot data:
Legend:
 Gene coexpression network
 Statistical settings
Corr. method:
Correlation ≥: 
Top genes to draw:
Submit
 Visual style

Background color:

Line

Nodes

Filter by correlation

Show genes with corr. ≥

Continuous color

 Nodes
 Edges
 Gene coexpression file
 
 View expression profile
 Gene Wiki
 Interaction Network
 Reagents
 Search
 Search
 Search
 Pathway
 Pathway
 [See More Plugins...]
 Plugin
Available plugins
GenomicScape Plugin Library
Plugins are 3rd party websites that you can use to learn more about your gene of interest.
Please click on the row of interest, to see more about your genes.
 Datasets
 STEP I - Select a dataset of interest:
  • Datasets
    • Healthy tissues or cells
      • B to plasma cells (n = 3)
        •  Human plasma cell differentiation GCRMA (sample =38)
        •  Human plasma cell differentiation GCRMA unlogged (sample =38)
        •  Human plasma cell differentiation MAS5 (sample =38)
    • Cancer tissues or cells
      • Colorectal (n = 1)
        •  Hong Colon (sample =82)
      • Leukemia (n = 1)
        •  Friedman Leukemia (sample =68)
      • Lung (n = 1)
        •  Sanchez Lung (sample =91)
      • Lymphoma (n = 1)
        •  Lenz Lymphoma (sample =420)
      • Myeloma (n = 4)
        •  HM Myeloma 1 (sample =236)
        •  HM myeloma cell lines (sample =42)
        •  HM Myeloma Microenvironment (sample =27)
        •  Zhan Myeloma (sample =345)
      • Pancreatic (n = 1)
        •  Badea Pancreatic (sample =78)
 STEP II - Select the groups of interest:
Current dataset description:

Plot options
  • Title
  • Axis
Plot title
Show title
Title :
Font : 
X axis
Title
Show title
Title : 
Font : 
Scale
x (min) :     x (max) :
Log scale/Normalize:
Tick mark label
Show tick mark labels
Font : 
Rotation angle: 
Y axis
Title
Show title
Title : 
Font : 
Scale
Y (min) :     Y (max) :
Log scale/Normalize:
Tick mark label
Show tick mark labels
Font : 
Rotation angle: 

 
  •  Annotation
  •  Expression Plot
Legend:
 Continuous color

 Color continuously according to the correlation coefficent



High: 

Low: 

 Change dataset
Current dataset description: